Software

R packages

• SOMNiBUS

A method for estimating smooth covariate effects and identifying differentially methylated regions, which copes with experimental errors and provides reliable inference. Paper

• sparseSOMNiBUS, coded with Rcpp

A sparse-smooth modeling method for identifying SNPs associated with methylation levels in a region, which copes with high-dimensional feature space and allows variable selection.

• MoMotif

A bioinformatics tool for a sensitive identification, at the single base-pair resolution, of complex, or subtle, alterations to core binding motifs, discerned from ChIP-seq data. Paper

Shiny Application

• A web-based Risk Calculator for Readmission for Dehydration following Creation of a Diverting Loop Ileostomy. Website. Paper